If "Transparent Torification" in Proxy Settings is enabled I'd expect do directly access the Internet without Tor (if no iptables rules redirect the traffic to a TransPort).
Steps to reproduce:
open torbrowser
click the onion
select preferences
select "Transparent Torification" (radio button)
select "OK" (nothing happens - the windows does not close)
close the window and torbrowser
open torbrowser (the onion sign shows a big "X" in front of it)
one would expect that Tor is not enabled
open a website to check your source IP (i.e. checkip.dyndns.org)
expected result: browser should show a non-Tor exit IP address.
actual result: browser shows a Tor exit IP address
(This test was not done at an internet connection that is also hosting an exit node)